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dc.contributor.authorHuynh, Paul Dong
dc.date.accessioned2018-07-12T18:57:27Z
dc.date.available2018-07-12T18:57:27Z
dc.date.issued1999
dc.identifier.citationSource: Dissertation Abstracts International, Volume: 61-02, Section: B, page: 7140.;Advisors: Alan Finkelstein.
dc.identifier.urihttps://yulib002.mc.yu.edu/login?url=http://gateway.proquest.com/openurl?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:dissertation&res_dat=xri:pqm&rft_dat=xri:pqdiss:9961312
dc.identifier.urihttps://hdl.handle.net/20.500.12202/3844
dc.description.abstractDiphtheria Toxin (DT) is a 535-amino acid polypeptide secreted by Corynebacterium diphtheria. Upon mild proteolysis and reduction, the toxin separates into two fragments: the N-terminal A fragment, that kills cells by enzymatically inhibiting their protein synthetic machinery, and the C-terminal B fragment, that is required for the binding of the toxin to the cell surface and for translocation of the A fragment from the extracellular space to the cytosol. The machinery for this latter process resides in the B fragment's N-terminal 172 residues, known as the T-domain, which forms ion-conducting channels in planar lipid bilayers at acidic pH. The T-domain consists of ten alpha-helices (designated THI-TH9 and TH5'). It has been shown that the 61-amino acid segment from residue 322 to 382 in the T-domain is all that is required to form the ion-conducting channel. In the crystal structure of the water-soluble form of the toxin, most of this 61-amino acid stretch consists of an alpha-helical hairpin, designated TH8-9, which contains helices TH8 (19 amino acids), TH9 (21 amino acids), and the interhelical loop (9 amino acids) connecting them.;This thesis reports my studies, in planar lipid bilayers, of the pH dependence of DT channel formation and of the identification of the residues that line the channel's ion-conducting pathway. Chapter 1 gives a general introduction to what is known about the action of diphtheria toxin, its channel-forming properties, and its water-soluble structure. Chapters 2 and 3 deal with the pH dependence of channel formation. The former shows that linking, via disulfide bonds, the interhelical loop of TH8-9 to loops outside of this region inhibits the low pH-induced exposure of TH8-9 and dramatically inhibits channel-forming ability. The latter chapter identifies the two acidic residues in the interhelical loop of TH8-9, Glu 349 and Asp 352, as responsible for most of the trans pH dependence of channel formation. Chapters 4 and 5, which are the main focus of this thesis, deal with the identification of residues lining the ion-conducting pathway of the channel. Cysteines were substituted, one at a time, at 49 continuous positions (residues 328--376) in TH8-9, and their accessibility to small, charged, lipid-insoluble, methanethiosulfonate (MTS) derivatives was determined. Chapter 4 describes the phenomenology of the single-channel response to these MITS-derivatives at four sites in the TH8-9 interhelical loop, and Chapter 5 extends these findings to the rest of TH8-9. The results obtained in Chapter 5 reveal a very unusual distribution for the residues lining the ion-conducting pathway, that is inconsistent with either an alpha-helical or beta-strand structure for the channel. In addition, the nature of the response of cysteine-mutant channels to the MTS derivatives surprisingly leads to the suggestion that the diphtheria toxin channel is not multimeric, but is instead formed from one TH8-9 unit. The last chapter (Chapter 6) summarizes the findings of the preceding 4 chapters and discusses future research directions.
dc.publisherProQuest Dissertations & Theses
dc.subjectNeurosciences.
dc.subjectBiophysics.
dc.subjectBiochemistry.
dc.subjectCellular biology.
dc.titleThe diptheria toxin channel in planar lipid bilayers: Studies on its pH -dependent formation and identification of the residues lining its ion -conduction pathway
dc.typeDissertation


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